Profile photo Hae-Won Uh

Hae-Won Uh

Associate Professor

Strategic program(s):

Biography

After years of being a concert pianist, Hae-Won Uh studied math as a hobby. She obtained MSc and PhD in Mathematical Statistics from University of Amsterdam. She has been working as a researcher in the multidisciplinary environment, specializing in Statistical Modeling and Data Science. She has been involved in various EU-funded projects: MIMOmics, BigData@Heart, IMforFUTURE, and MSA-Omics.

Her research focuses on the analysis of high-dimensional biological and medical data: specifically, statistical leaning with sparsity. In the era of big data, extracting hidden patterns from noisy heterogeneous data is essential but challenging. She develops methods for integrated analysis of various omics datasets (e.g. genetics, transcriptomics, metabolomics) to obtain more insight into biological mechanisms underlying traits. Such extracted patient-specific molecular profiles from multiple omics datasets will lead to better predictions of health outcomes.

Compositional data describe amounts of components of specimens, when the size of each specimen is constant; relative portions sum up to 100%. Because of this constraint of constant sum, direct applications of multivariate statistical methods may result in spurious conclusions. She develops statistical methods specifically for microbiome study: in particular, longitudinal models to fit the dynamic association among microbiome, environments and host.

A smartphone with a camera can detect heart rhythms, without medical assistance or additional instruments. She investigates the usage of  smartphone apps to acquires pulse waveforms via photoplethysmography (PPG). PPG is  related to cardiac-induced fluctuations in tissue blood volume using the built-in cameras and LED smartphone flash. She develops an algorithm to reconstruct the sharp spikes of a true ECG from a PPG record. This will lead to an efficient model that well discriminates an irregular pulse during AF from sinus rhythm.

Recent publications

Statistical integration of multi-omics and drug screening data from cell lines Said El Bouhaddani, Matthias Höllerhage, Hae-Won Uh, Claudia Moebius, Marc Bickle, Günter Höglinger, Jeanine Houwing-Duistermaat
PLoS Computational Biology, 2024, vol. 20
Digital Twins in Healthcare Charles Meijer, Hae-Won Uh, Said El Bouhaddani
Journal of Personalized Medicine, 2023, vol. 13
Smartphone detection of atrial fibrillation using photoplethysmography Simrat Gill, Karina V Bunting, Claudio Sartini, Victor Roth Cardoso, Narges Ghoreishi, Hae-Won Uh, John A Williams, Kiliana Suzart-Woischnik, Amitava Banerjee, Folkert W Asselbergs, Mjc Eijkemans, Georgios V Gkoutos, Dipak Kotecha
Heart, 2022, vol. 108, p.1600-1607
Statistical integration of heterogeneous omics data: Probabilistic two-way partial least squares (PO2PLS) Said el Bouhaddani, Hae-Won Uh, Geurt Jongbloed, Jeanine Houwing-Duistermaat
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS, 2022, vol. 71, p.1451-1470
Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations J Pei, M Schuldt, E Nagyova, Z Gu, S El Bouhaddani, L Yiangou, M Jansen, J J A Calis, L M Dorsch, C Snijders Blok, N A M van den Dungen, N Lansu, B J Boukens, I R Efimov, M Michels, M C Verhaar, R de Weger, A Vink, F G van Steenbeek, A F Baas, R P Davis, H W Uh, D W D Kuster, C Cheng, M Mokry, J van der Velden, F W Asselbergs, M Harakalova
Clinical Epigenetics, 2021, vol. 13, p.1-20
Statistical integration of two omics datasets using GO2PLS Zhujie Gu, Said El Bouhaddani, Jiayi Pei, Jeanine Houwing-Duistermaat, Hae-Won Uh
BMC Bioinformatics, 2021, vol. 22, p.1-18