Jeroen de Ridder

Full Professor

Strategic program(s):

Contact

jridder4@umcutrecht.nl

Pure profile

Research groups

Bioinformatics in molecular medicine

Research aim

We are a bioinformatics lab that creates and applies innovative data science methods to advance our understanding of disease biology and molecular medicine with a focus on cancer research.

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Recent publications

All publications

Evidence of survival bias in the association between APOE-Є4 and age at ischemic stroke onset Joanna von Berg, Patrick F. McArdle, Paavo Häppölä, Jeffrey Haessler, Charles Kooperberg, Robin Lemmens, Alessandro Pezzini, Vincent Thijs, Sara L. Pulit, Steven J. Kittner, Braxton D. Mitchell, Jeroen de Ridder, Sander W. van der Laan,
Frontiers in Genetics, 2024, vol. 15

Glioblastoma, IDH-wildtype with primarily leptomeningeal localization diagnosed by nanopore sequencing of cell-free DNA from cerebrospinal fluid Nik Sol, Evert Jan Kooi, Marc Pagès-Gallego, Dieta Brandsma, Marianna Bugiani, Jeroen de Ridder, Pieter Wesseling, Carlo Vermeulen
Acta Neuropathologica, 2024, vol. 148, p.1-4

Co-expression in tissue-specific gene networks links genes in cancer-susceptibility loci to known somatic driver genes Carlos G. Urzúa-Traslaviña, Tijs van Lieshout, Floranne Boulogne, Kevin Domanegg, Mahmoud Zidan, Olivier B. Bakker, Annique Claringbould, Jeroen de Ridder, Wilbert Zwart, Harm Jan Westra, Patrick Deelen, Lude Franke
BMC Medical Genomics, 2024, vol. 17

Evidence of survival bias in the association between APOE-ϵ4 and age of ischemic stroke onset. Joanna von Berg, Patrick F McArdle, Paavo Häppölä, Jeffrey Haessler, Charles Kooperberg, Robin Lemmens, Alessandro Pezzini, Vincent Thijs, Sara L Pulit, Steven J Kittner, Braxton D Mitchell, Jeroen de Ridder, Sander W van der Laan,
2023

Echtvar Brent S. Pedersen, Jeroen de Ridder
Nucleic acids research, 2023, vol. 51, p.1-8

Comprehensive benchmark and architectural analysis of deep learning models for nanopore sequencing basecalling Marc Pagès-Gallego, Jeroen de Ridder
Genome Biology, 2023, vol. 24, p.1-18

External positions

Chief Science Officer - Management of R&D and science activities - Cyclomics BV